type
melodic --help
and you will see!
cheers-
a.
________________________________________
Von: FSL - FMRIB's Software Library [[log in to unmask]] im Auftrag von Yiou Li [[log in to unmask]]
Gesendet: Donnerstag, 1. April 2010 20:21
An: [log in to unmask]
Betreff: Re: [FSL] AW: [FSL] AW: [FSL] About registration in group analysis by MELODIC & About automating the data input for group analysis using MELODIC
Hi all,
Thanks for the clarification. The manual page gives the usage of the
GUI model. But I was asking about the command line options for choice
temporal concatenation and tensorial ICA.
Any further comment?
Best,
Leo
On Thu, Apr 1, 2010 at 10:45 AM, Cornelius Werner
<[log in to unmask]> wrote:
> This is too sweet :-)
>
> "rtfm" means "read the fine manual" (or derogatives thereof).
>
> So please be kindly advised to go to
>
> http://www.fmrib.ox.ac.uk/fsl/melodic/index.html
>
> peruse everything with "Melodic" in it and you should be set.
>
> Cheers,
> Cornelius
>
>
> Am 01.04.2010 um 19:17 schrieb Yiou Li:
>
>> Hi Andreas,
>>
>> I installed MELODIC v3.09 and there is no such an option as 'rtfm'.
>> Neither can I find this option by melodic --help. Also what does this
>> option mean: 'temporal concatenation' or 'tensorial ICA'?
>>
>> Please kindly advise which version of melodic you use.
>>
>> Best,
>> Leo
>>
>> On Wed, Mar 31, 2010 at 10:55 PM, Andreas Bartsch
>> <[log in to unmask]> wrote:
>>> Hi,
>>> sure - rtfm!
>>> See
>>> melodic --help
>>> to get the usage.
>>> Cheers,
>>> Andreas
>>>
>>> ________________________________________
>>> Von: FSL - FMRIB's Software Library [[log in to unmask]] im Auftrag von Yiou Li [[log in to unmask]]
>>> Gesendet: Donnerstag, 1. April 2010 02:13
>>> An: [log in to unmask]
>>> Betreff: Re: [FSL] AW: [FSL] About registration in group analysis by MELODIC & About automating the data input for group analysis using MELODIC
>>>
>>> Hi Andreas,
>>>
>>> Thanks for your note.
>>>
>>> One more question: is there an option in the melodic command that
>>> specifies whether "temporal concatenation" or "tensorial ICA" is used?
>>>
>>> Best,
>>> Leo
>>>
>>>
>>> On Wed, Mar 31, 2010 at 3:05 PM, Andreas Bartsch
>>> <[log in to unmask]> wrote:
>>>> hi,
>>>> but this is absolutely flexible. running it from command line does not perform any registration, you just need to take care of it before!
>>>> cheers-
>>>> andreas
>>>>
>>>> ________________________________________
>>>> Von: FSL - FMRIB's Software Library [[log in to unmask]] im Auftrag von Yiou Li [[log in to unmask]]
>>>> Gesendet: Mittwoch, 31. März 2010 23:18
>>>> An: [log in to unmask]
>>>> Betreff: Re: [FSL] About registration in group analysis by MELODIC & About automating the data input for group analysis using MELODIC
>>>>
>>>> Hi Mikael,
>>>>
>>>> Thanks for your answer. I went through the options by $ melodic
>>>> --help but couldn't find any option to turn off the image
>>>> registration. Since I will perform a group analysis of 40 subjects, it
>>>> will take a long time (w/o grid computing) on the preprocessing. I
>>>> just want to save the time since I've done the preprocessing
>>>> separately.
>>>>
>>>> I would suggest, maybe in the next release, such option can be added
>>>> to MELODIC to make it more flexible -- just an idea.
>>>>
>>>> Best,
>>>> Leo
>>>>
>>>>
>>>> 2010/3/31 Mikaël Naveau <[log in to unmask]>:
>>>>> Hi Leo,
>>>>>
>>>>> You could use melodic command line tool on your preprocess dataset.
>>>>> $ melodic --help
>>>>> You'll find more accessible option than GUI.
>>>>> melodic accept text file with list of fMRI data as input and you can turn
>>>>> off some preprocessing options.
>>>>>
>>>>> hth
>>>>>
>>>>> Mikaël
>>>>>
>>>>> Yiou Li a wrote
>>>>>>
>>>>>> Dear all,
>>>>>>
>>>>>> I found it is impossible to turn of the registration option in MELODIC
>>>>>> when performing group analysis on multiple datasets. Since I have
>>>>>> already had all the datasets registered using a separate program, can
>>>>>> I input those registrated datasets to MELODIC and turn off the
>>>>>> registration within MELODIC?
>>>>>>
>>>>>> Your advise is appreciated!
>>>>>>
>>>>>> Best,
>>>>>> Leo
>>>>>>
>>>>>>
>>>>>>
>>>>>
>
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