I recommend the Beginners and Advanced Bash Shell scripting guides located
here: http://tldp.org/guides.html
I have used these as reference for my learning of shell scripting with FSL.
As for learning how to use the FSL tools, I recommend looking at the usage
of the commandline versions of FSL utilities that you use the GUI for. See
if you can implement what you would do with the GUI in a script with the
commandline. Then you can do things like run the same processing stream on
a bunch of different subjects and much more.
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of AMDC
Sent: Thursday, April 01, 2010 9:41 PM
To: [log in to unmask]
Subject: [FSL] FSL scripting
Hi there,
Other than what's available at http://www.fmrib.ox.ac.uk/fslcourse/ are
there more resources for FSL scripting, or even sample scripts that can be
learned from to extrapolate to more complex experimental designs? Though I
have some unix experience, I am new to FSL scripting and not sure how much I
can do outside of the GUI
Thanks,
A-M
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