Dear Wayne,

thank you for your answer. Indeed yesterday I have also run Cing 
validation in CCPN, but it was before running aria. I am pretty sure I 
have not run the 2 processes on the same project file at the same time, 
also because I have run aria on cluster and, if I run a second process 
it would be on local pc. Thus, I have though to Cing or Aria, but it is 
only an idea even if it is not the first time it happens.

For the project, I really thank you for your help but I have seen I can 
restart from the last backup.

Thank you very much.
Best regards,

Francesca



On 21/04/2010 15:01, Wayne Boucher wrote:
> Hello,
>
> Talking it over with Tim, he thinks it might be that two different
> processes have been accessing the same project files and so in effect
> trampling each other.  We currently have no way of locking a project (so
> in particular the files in the project directory) to prevent another
> process from concurrently writing to it.  In theory one could try to set
> up a duplicate project (using Save As) before the ARIA run, but there is
> no perfect way to merge the data back into the original project.  This is
> on the TODO list but for now I guess the recommendation is to let the ARIA
> run finish before proceeding with more manual work on the project.
>
> For this specific problem, if you email me the project (gzipped tar, as
> given by the Project -->  Archive dialog, for example) off list then we
> should be able to get it to open again.
>
> Wayne
>
> On Wed, 21 Apr 2010, Francesca Chignola wrote:
>
>    
>> Dear all,
>>
>> I have encountered the following error after a ARIA2.3.1 run:
>>
>>      
>>>>> Error during Exo link dereferencing. Object was:<ccp.nmr.Nmr.StructureGeneration ['phd2', 46]>
>>>>>            
>> values were:  ['phd2_zn_OK_fchignola_2010-04-20-17-43-47-113_00001']
>> tag name was:  structureEnsemble
>> Error loading file for:<ccp.nmr.Nmr.NmrProject ['phd2']>
>> Reading:<open file '/home/public/data/fchignola/nmr/CCPN_phd2/phd2_zn_OK/ccp/nmr/Nmr/phd2+phd2_user_2009-10-13-12-55-19_00121.xml', mode 'r' at 0x5ec7300>
>> Last xml tag read:  _StorageUnit
>> Parser state was:  postprocessing data
>> Object stack was empty
>>
>> I am not used to xml language but I have tried to look for 'phd2_zn_OK_fchignola_2010-04-20-17-43-47-113_00001' into the phd2+phd2_user_2009-10-13-12-55-19_00121.xml file and I have only understand it could be correlated to the last aria run, but I cannot understand how to solve this problem.
>> Could anyone help me?
>>
>> I have also noticed that in the same file there is a lot of information regarding old run's structures exported by Aria but deleted from the project (graphical format). Is it ok or could it be problematic?
>>
>> Thanks in advance for any suggestion,
>> Regards
>>
>> Francesca
>>
>>      
>    

-- 
-------------------------------
Francesca Chignola, PhD
Dulbecco Telethon Institute c/o S. Raffaele Scientific Institute
Center of Genomics, BioInformatics and BioStatistics
Biomolecular NMR Laboratory 1B4
Via Olgettina 58
20132 Milano
Italy

Tel: +39-0226434348/3497
Fax: +39-0226434153
-------------------------------


-------------------------------------------------------------
DAI IL TUO 5 X MILLE AL SAN RAFFAELE. BASTA UNA FIRMA.
SE FIRMI PER LA RICERCA SANITARIA DEL SAN RAFFAELE DI MILANO, FIRMI PER TUTTI.
C.F. 03 06 42 80 153
INFO: [log in to unmask] - www.5xmille.org