I know two programs;
3DNA by Lu and curves by Lavery and Sklenar. 3DNA is easier to use, it
can also make input for the Curves.
Maia
Alessandra Pesce wrote:
>
> Dear All,
>
> I am looking for available programs and/or websites able to check the
> structure of DNA in DNA-protein complexes. I need to evaluate the DNA
> bending, its backbone distortion, the alteration of the base pairing,
> and its interaction with the protein. The aim is to compare in easy
> and quick way different conformation of DNA in different DNA-protein
> complexes. Can anybody help me?
>
> Thanks in advance.
>
> Cheers
>
> Alessandra
>
>
> *************************************************************
> Alessandra Pesce, PhD
> Department of Physics
> University of Genova
> Via Dodecaneso 33
> 16146 Genova, Italy
>
> Tel.(DIFI) ++39 010 353 6243 | 6309
> e-mail [log in to unmask] <mailto:[log in to unmask]>
> *************************************************************
>
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