c-shell syntax would be:
bin/ncont XYZIN 1FNT_BJ.pdb <<eof>ncont.log
source /*/B
target /*/J
maxdist 6.0
eof
Best,
Clemens
Zitat von Thomas Juettemann <[log in to unmask]>:
> Dear all,
>
> I am pretty new to the CCP4 suite. I am trying to automise the
> execution and parsing of ncont.
> Could someone advise me how (if possible) to pass parameters to the program?
>
> I am trying to do something like
>
> bin/ncont XYZIN 1FNT_BJ.pdb
> source /*/B
> target /*/J
> maxdist 6.0
>
> and have the output redirected into a file.
>
> Thank you for your time!
>
> Best wishes,
> Thomas
>
>
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Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: [log in to unmask]
phone : +49 0931 888 84031
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