several options with no need for extra software:
(1) goto http://www.ebi.ac.uk/pdbe/
left handside under "Get PDB by ID" enter a pdb idcode for example 1mh1
you get
http://www.ebi.ac.uk/pdbe-srv/view/entry/1mh1/summary
goto Structure primary and click Fasta
cut and paste the sequence
(2) pickup the file, it contains all fasta sequences
ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb-remediated/derived_data/pdb_seqres.txt
(3) or pickup this file which is a better format of JUST proteins
ftp://ftp.ebi.ac.uk/pub/databases/msd/pdb_aa.fasta
(all peptide sequences in released PDB)
Miri
PDBe EBI
On Sun, 4 Apr 2010, Rex Palmer wrote:
> Is there software that will extract a protein sequence in either 3 letter
> or single letter code from a given pdb file?
>
> Rex Palmer
> Birkbeck College
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