Hi bb,
when I try to run al3 (align) I get the error message
error while loading shared libraries: libcxa.so.5: cannot open shared
object file: No such file or directory
In fact, this file exists. How can I tell al3 where to look for this file?
Maia
Ed Pozharski wrote:
> On Fri, 2010-04-30 at 13:35 +0100, Nicholas Keep wrote:
>
>> If anyone has a piece of software that would do this it would be
>> great.
>>
>>
>
> How about this (this is a single line)
>
> ---
> grep 'ATOM\|HETATM' file1.pdb file2.pdb |grep -v REMARK | cut -d: -f 2 |
> cut -c 13-54 | sort | awk 'BEGIN {FIELDWIDTHS = "14 28"; pt=""} {if(pt==
> $1) print pr,$2; pt=$1; pr=$0;}' | awk 'BEGIN {FIELDWIDTHS = "14 4 8 8 8
> 5 8 8 8"} {printf "%s %8.4f\n",$1,sqrt(($3-$7)^2+($4-$8)^2+($5-$9)^2);}'
> | awk 'BEGIN {FIELDWIDTHS = "4 1 3 1 1 5 9"} {printf "%s %s %s %s %s\n",
> $3,$5,$6,$1,$7;}'
> ---
>
> The output is not sorted (sort isn't friendly to the idea of sorting
> alphabetically and numerically at the same time). And "awk" means
> "gawk" - "mawk" (Ubuntu default) doesn't allow fixed field selection
> which is key to dealing with files that have alternate conformers).
>
> HTH,
>
> Ed.
>
>
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