Hi Gwenaelle,
This makes perfect sense. I will give it a try. Thanks a lot for all of your
help.
Regards,
Roger
Quoting Gwenaëlle DOUAUD <[log in to unmask]>:
> Hi Roger,
>
>
>> Is there an automated or other efficient way to do this
>> such as feeding in the
>> coordinates of all_voxels_significant.txt into the JHU
>> White-Matter
>> Tractography Atlas and getting labels for these
>> voxels?
>
> This would be very labour-intensive, but you could always use a
> script on the atlasquery command.
>
>
>> I could then bin them
>> manually according to white matter structure and compute
>> mean FA
>> values. Better yet, does a program within FSL exist to
>> perform all of
>> these steps with
>> minimal manual intervention?
>
> No, I'm afraid not.
>
> Again, I think that you should instead either look at your results
> using fslmeants on your "intersected" masks, try another correction
> for multiple comparisons, or possibly also use the --olmax and -n
> options of the cluster command to get all local maxima within your
> big cluster.
>
> Cheers,
> Gwenaelle
>
>
>
>
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