Hello FSL,
I'm running FIRST and get to the stage where the first_flirt registrations
look good when viewed with slicesdir, and it finishes producing these files:
*_all_fast_firstseg.nii.gz
*_all_fast_origsegs.nii.gz
*.vtk
*.bvars
When I display the *_all_fast_firstseg.nii.gz over the original T1 image I
fed into FIRST, it definitely is not matching up (segmentations look
mis-registered) though there are structures defined in the
*_all_fast_firstseg.nii.gz file.
When I display the non-boundary corrected images *_all_fast_origsegs.nii.gz
over the original T1 image I fed into FIRST, the segmentations are in the
correct place.
In the error logs, everything looks normal except for this:
::::::::::::::
first_post.e15071.1
::::::::::::::
Inconsistency in labelings passed to score
Inconsistency in labelings passed to score
Inconsistency in labelings passed to score
Inconsistency in labelings passed to score
Inconsistency in labelings passed to score
Inconsistency in labelings passed to score
...
Can you help me with what this error means and how to solve it?
Thanks!!
Jason
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