I am following the instructions on the FSL site to pre-process diffusion
data prior to bedpostX. After eddy current correction worked nicely I tried
to use the provided script to rotate by bvecs, but kept getting an error
message. On the site the script is written as:
rotate_bvecs <4doutput>.ecclog <bvecs>
so I entered: rotate_bvecs
/home/gklein/probDTI/DiffData/ambersleydata/DTI_Sat33+5/data.ecclog
/home/gklein/probDTI/DiffData/ambersleydata/DTI_Sat33+5/RESUlug4s010a1001.bvec
and got this error message: [: 9:
/home/gklein/probDTI/DiffData/ambersleydata/DTI_Sat33+5/RESUlug4s010a1001:
unexpected operator
/usr/share/fsl/bin/rotate_bvecs: 21: Syntax error: "done" unexpected
(expecting "fi")
Am I entering the bvec file incorrectly or something. Any help would be
appreciated. Thanks.
-Gad
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