Thank you for that. I got it running, but after 20 something hours, it
appears to have finished but I got error messages -
Errors - /usr/local/fsl/bin/bedpostx: line 250: kill: (4591) - No such
process
And this one -
grab failed: window not viewable
grab failed: window not viewable
while executing
"grab -global $w"
(procedure "tk::MbPost" line 118)
invoked from within
"tk::MbPost $tk::Priv(inMenubutton) 1077 101"
invoked from within
"if {$tk::Priv(inMenubutton) ne ""} {
tk::MbPost $tk::Priv(inMenubutton) 1077 101
}"
(command bound to event)
Thoughts?
Cheers,
Jo
On Tue, 2010-03-02 at 22:41 +1300, Saad Jbabdi wrote:
> Make sure these files are called "bvals" and "bvecs" with no extension
> (i.e. NOT bvals.txt etc.)
>
>
> Saad.
>
>
>
> On 2 Mar 2010, at 03:01, Joanne Lin wrote:
>
> > Hi everyone,
> >
> > I am trying to select an input directory in the bedpostx GUI, but
> > have
> > come up with an error message -
> >
> > wrong # args: should be "set_working_directory cwd filename"
> > wrong # args: should be "set_working_directory cwd filename"
> > while executing
> > "set_working_directory dtifit(cwd) /home/jlin137/Data/FSL
> > Analysis/Controls/fdt_subj02"
> > ("eval" body line 1)
> > invoked from within
> > "eval "$command $outputfile1" "
> > (procedure "feat_file:invoke" line 29)
> > invoked from within
> > "feat_file:invoke .wdialog1
> > bedpost(directory) .fdt.bedpost.directory.var_filhis .fdt.bedpost.directory.var_selhis ::FileEntry {set_working_directory d..."
> > invoked from within
> > ".wdialog1.f4.but_ok invoke"
> > ("uplevel" body line 1)
> > invoked from within
> > "uplevel #0 [list $w invoke]"
> > (procedure "tk::ButtonUp" line 22)
> > invoked from within
> > "tk::ButtonUp .wdialog1.f4.but_ok"
> > (command bound to event)
> >
> >
> > I then ran bedpostx_datacheck and got this -
> >
> >
> > .//data
> > data_type INT16
> > dim1 128
> > dim2 128
> > dim3 45
> > dim4 31
> > datatype 4
> > pixdim1 1.7968750000
> > pixdim2 1.7968750000
> > pixdim3 3.0000000000
> > pixdim4 1.0000000000
> > cal_max 2853.0000
> > cal_min 0.0000
> > file_type NIFTI-1+
> >
> > .//nodif_brain_mask
> > data_type INT16
> > dim1 128
> > dim2 128
> > dim3 45
> > dim4 1
> > datatype 4
> > pixdim1 1.7968750000
> > pixdim2 1.7968750000
> > pixdim3 3.0000000000
> > pixdim4 1.0000000000
> > cal_max 0.0000
> > cal_min 0.0000
> > file_type NIFTI-1+
> >
> > num lines in .//bvals
> > cat: .//bvals: No such file or directory
> > 0
> > num words in .//bvals
> > cat: .//bvals: No such file or directory
> > 0
> > num lines in .//bvecs
> > cat: .//bvecs: No such file or directory
> > 0
> > num words in .//bvecs
> > cat: .//bvecs: No such file or directory
> > 0
> > cat: .//bvals: No such file or directory
> > cat: .//bvals: No such file or directory
> > Runtime error (func=(main), adr=3): Divide by zero
> > cat: .//bvecs: No such file or directory
> > cat: .//bvecs: No such file or directory
> > Runtime error (func=(main), adr=3): Divide by zero
> > /usr/local/fsl/bin/bedpostx_datacheck: line 51: [: too many
> > arguments
> > /usr/local/fsl/bin/bedpostx_datacheck: line 55: [: too many
> > arguments
> > /usr/local/fsl/bin/bedpostx_datacheck: line 59: [: too many
> > arguments
> > number of elements in bvals is not equal to number of vols in data
> > /usr/local/fsl/bin/bedpostx_datacheck: line 67: [: too many
> > arguments
> >
> > It seems that it's telling me my bvecs/bvals aren't in the place
> > where
> > they should be, but they are. Could there be something wrong with
> > my
> > files or the format of them?
> >
> >
> > Cheers,
> > Jo
> >
> >
> >
> >
>
> --
> Saad Jbabdi
> University of Oxford, FMRIB Centre
>
>
> JR Hospital, Headington, OX3 9DU, UK
> (+44)1865-222466 (fax 717)
> www.fmrib.ox.ac.uk/~saad
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
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