Hi,
I'm afraid that the --usemm only affects the input for -c (which it
sort of says in the help text). So it always outputs voxel coordinates.
If you want them in mm coordinates you'll have to use img2stdcoord
to convert them (as part of a script).
All the best,
Mark
On 27 Mar 2010, at 09:52, Markus Gschwind wrote:
> Dear all,
>
> Could anybody tell me how I could get the coordinates in the output
> of fslmeants --showall in MNI mm coordinates?
> I am trying the following
>
> fslmeants -i all_FA_skeletonised -m mymask.nii.gz -o
> all_FA_skeletonised_voxels_in_mymask.txt --usemm --showall
>
> but it still shows voxel coordinates. Is it not possible to use --
> usemm and --showall together?
>
> Thanks for any hints!
> Best
> Markus
>
>
> --
>
>
> Dr. med. Markus Gschwind, M.D.
> Laboratory for Neurology and Imaging of Cognition - Dept of
> Neurosciences
> University Medical Center (CMU)
> 1, Michel-Servet
> CH-1211 GENEVA - Switzerland
>
> Tel 0041 (0) 22 379 5324
> Fax 0041 (0) 22 379 5402
> email: [log in to unmask]
> http://labnic.unige.ch
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