Hi Mark,
Thanks for the reply. I did not use a Vitamin E capsule but perhaps i'll do that henceforth to
confirm. Meanwhile,since the linux version sets the sform and the MacPPC version doesnt,
i manually set it to match that of the linux version using fslorient -setsformcode 1 epi.nii.gz
I then checked the images in FSLVIEW on both machines and they look the same. This
should be a confirmation that i've set the orientation correctly..right?
just out of curiosity, when the sform, qform is unknown , does 'fslorient -getorient' assume
that the image is Radiological?
-Vish
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