Hi,
On Mon, Feb 15, 2010 at 05:07:35AM +0000, Daniel Stjepanovic wrote:
> Hi all,
>
> I've installed FSL on my Ubuntu 9.10 system from the repos, but have hit a
> snag trying to run bet from the command line:
>
> dan@dan-ubuntu:~/data/3T_structurals/Scripts$ bet ../0_orig_dicom/0001_wbc
> ../1_wbc/0001_wbc_bet -v
> /usr/lib/fsl/bet: 150: /bin/remove_ext: not found
> /usr/lib/fsl/bet: 151: /bin/remove_ext: not found
> /usr/lib/fsl/bet: 158: /bin/imtest: not found
> [: 158: =: unexpected operator
> IN=
> OUT=
> bet2opts= -v
> verbose=1
> debug=0
> variation=0
> /usr/lib/fsl/bet: 380: /bin/bet2: not found
>
> bet appears to be looking for remove_ext, bet2 and others in /bin/, but all
> of the binaries are installed in /usr/lib/fsl/ by default. I'm able to run
> the gui version (Bet) without any problems, but would prefer to script the
> operation. Any ideas why this is happening?
What version of the FSL package did you install -- it looks old.
Did your source the config file as described in `man fsl`?
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://mih.voxindeserto.de
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