Hi Mark and Duncan,
I used Ubuntu 9.10 x64 bit version and tried installing FSL from both
synaptic and also from fsl_4.1.4_centos5_64.tar.gz file and the problem was
the same.
BET and Prelude worked fine from terminal but gave error in matlab verson
R2009 64 bit.
But then I made a fresh install of Kubuntu on my laptop and there everything
worked fine from both terminal and matlab. I installed and sourced FSL the
same way as I used to do in ubuntu. So then I gave up troubleshooting
further on ubuntu.
Thanks for your suggestions.
Gopesh
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