Hi Cibu,
it seems your FSLDIR environment variable is not set. I guess you did
not source /Applications/fsl/etc/fslconf/fsl.sh (or alternatively have a
fsl.sh in /Users/thomascp/.fslconf that compromises your configuration).
Cheers,
Niklas
Cibu Thomas wrote:
> Hello
> I tried running bedpostx and got the error message
> Child Process Terminated
>
> I ran a bedpostx data check and got the following errors. The necessary
> files are all in the input directory. But it doesn't pass the data check.
> Any thoughts on how to fix this would be greatly appreciated.
>
> Note: the preprocessing of the DTI data was done using TORTOISE
>
> Cheers
> Cibu
>
>
>
> /Applications/fsl/bin/bedpostx_datacheck: line 11: /bin/imtest: No such
> file or directory
> /Applications/fsl/bin/bedpostx_datacheck: line 11: [: -eq: unary operator
> expected
> /Users/thomascp/Desktop/NIMH/Imaging_Projects/DWI/Pilot-DTI/GLOVER_MCKINLEY_NMN-4600290/2010_02_03-03804/All_DWI_NonUpSampled_proc/All_DWI_NonUpSampled_DMC_N1_FSL_RAW_SORTED/data
> does not exist
> /Applications/fsl/bin/bedpostx_datacheck: line 11: /bin/imtest: No such
> file or directory
> /Applications/fsl/bin/bedpostx_datacheck: line 11: [: -eq: unary operator
> expected
> /Users/thomascp/Desktop/NIMH/Imaging_Projects/DWI/Pilot-DTI/GLOVER_MCKINLEY_NMN-4600290/2010_02_03-03804/All_DWI_NonUpSampled_proc/All_DWI_NonUpSampled_DMC_N1_FSL_RAW_SORTED/nodif_brain_mask
> does not exist
> num lines in
> /Users/thomascp/Desktop/NIMH/Imaging_Projects/DWI/Pilot-DTI/GLOVER_MCKINLEY_NMN-4600290/2010_02_03-03804/All_DWI_NonUpSampled_proc/All_DWI_NonUpSampled_DMC_N1_FSL_RAW_SORTED/bvals
>
> 1
> num words in
> /Users/thomascp/Desktop/NIMH/Imaging_Projects/DWI/Pilot-DTI/GLOVER_MCKINLEY_NMN-4600290/2010_02_03-03804/All_DWI_NonUpSampled_proc/All_DWI_NonUpSampled_DMC_N1_FSL_RAW_SORTED/bvals
>
> 80
> num lines in
> /Users/thomascp/Desktop/NIMH/Imaging_Projects/DWI/Pilot-DTI/GLOVER_MCKINLEY_NMN-4600290/2010_02_03-03804/All_DWI_NonUpSampled_proc/All_DWI_NonUpSampled_DMC_N1_FSL_RAW_SORTED/bvecs
>
> 3
> num words in
> /Users/thomascp/Desktop/NIMH/Imaging_Projects/DWI/Pilot-DTI/GLOVER_MCKINLEY_NMN-4600290/2010_02_03-03804/All_DWI_NonUpSampled_proc/All_DWI_NonUpSampled_DMC_N1_FSL_RAW_SORTED/bvecs
>
> 240
> /Applications/fsl/bin/bedpostx_datacheck: line 27: /bin/imtest: No such
> file or directory
> /Applications/fsl/bin/bedpostx_datacheck: line 27: [: -eq: unary operator
> expected
>
>
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