Thanks, Judit. That is exactly what I wanted. But it has not worked for
me yet.
To delete a chain in coot (also it would be nice to have a similar
function in Pymol, too).
The graphics programs make easily new chains, but it's difficult to
delete them without going to a text editor.
Also, again, I tried to delete all waters at once in coot, it's
difficult. You need map etc.
Maia
Debreczeni, Judit wrote:
> How about this:
> 1. click on the bin in the toolbar and select "Delete zone"
> 2. go to the first residue in the chain (in the Go to atom window or
> with ^g), click on the residue
> 3. similarly, go to the last one and click that
> -> Coot should delete the chain (it will take a while...)
>
>
> It that seems a little fiddly, try this:
> ---
> (define (delete-chain imol chain-id)
> (if (and (string? chain-id) and (number? imol))
> (let* ((n-res (chain-n-residues chain-id imol))
> (start (seqnum-from-serial-number imol chain-id 0))
> (end (seqnum-from-serial-number imol chain-id (- n-res
> 1))))
> (delete-residue-range imol chain-id start end))))
> ---
> where imol is the molecule number and chain-id is the chain you want to
> delete.
>
> using it like e.g.: (delete-chain 0 "A")
>
>
> JED.
>
>
>
> How nice would it be to be able to delete chains/residues in the go to
> atom window... or renumber residues and change chain IDs and copy
> fragments by simple drag-and-drop... sigh.
>
>
>
>
>
>
>
>
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> -----Original Message-----
> From: Mailing list for users of COOT Crystallographic Software
> [mailto:[log in to unmask]] On Behalf Of Maia Cherney
> Sent: 31 January 2010 20:07
> To: [log in to unmask]
> Subject: Re: [COOT] Coot, delete a chain
>
> Hi all,
>
> Is there a way to delete the whole chain of a complex?
>
> Or all solvent atoms at once?
>
> Maia
>
>
>
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