Hi,
I'd just like to add that if your labels in FSLView are correct then
you can
reorient much more simply by doing:
fslswapdim invol RL PA IS outvol
and this will make sure that no bad left-right swaps (or determinant
issues)
occur.
All the best,
Mark
On 1 Jan 2010, at 05:38, David Gutman wrote:
> I'd try and just load the MNI_152_T1_2mm image (just open fslview
> with no input file, and then do show standard brain)
>
>
> For my axially acquired T1's, I do fslswapdim input_image -z -x y
> swapped_input_image
>
> I just run this from command line--- just double check when you do
> fslswapdim you don't get the "determinant error" which means you
> swapped Left and Right... as that's bad!
>
>
>
>
>
> On Thu, Dec 31, 2009 at 1:45 PM, Eytan Raz <[log in to unmask]>
> wrote:
> Dear FSLers,
> I am running BET on a T13D sequence.
> I notice that BET does not work well.
> When I check the T13D sequence on fslview I see that the labels RL,
> AP and SI are correctly positioned; but the images look flipped on
> fslview as you can see in the attachment.
>
> I was said I should use fslswapdim.
> What I cannot get though is how should be the right orientation,
> i.e. which should be the right way in which it should appear on
> fslview...
> How can I know this?
> Thanks Eytan
>
>
>
> --
> David A Gutman, M.D. Ph.D.
> Center for Comprehensive Informatics
> Emory University School of Medicine
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