Regina Kettering wrote:
> I am running Coot prerelease dated Feb 2009 on a macbook, OS 10.6 (snow leopard). Prior to installing Reduce and Probe I had no problems, but I have been getting segmentation faults whenever I try to download a pdb and map from the EDS. Errors look something like:
>
> CCP4MTZfile: open_read - File missing or corrupted: coot-download/foo.mtz
> /usr/local/xtal/coot/bin/coot: line 7: 4056 Segmentation fault /usr/local/xtal/coot/bin/coot-real "$@"
>
> The fault number changes with each run, but the ultimate result is that it aborts Coot and closes.
>
> I also cannot run rotamer picking on longer residues (K or R), as it terminates after a runtime_error. It looks like something to do with the torsion restraints of various terminal atoms:
>
> Can't fill atom_quad with indices [torsion-restraint: hh1 NE CZ NH1 HH12 O 20 2]
> line 7: Abort trap
>
>
> Does anyone have any suggestions as to what it may be or should I try installing a newer version?
>
Dear Regina,
These issues have been fixed in 0.6.1-pre. If you want to try a pre-release:
http://www.biop.ox.ac.uk/coot/devel/build-info.html
If you can wait a couple of weeks, the 0.6.1 should be out soon.
I recently (2 days ago) installed fink (converted to unstable) and built
coot from scratch - it took a while (226 packages) but works fine and I
recommend it.
Paul.
|