Hi Chris,
Are you running bedpostx on a cluster using SGE?
Is there anything in the log files (directory called "logs" in
the .bedpostX output dir) that indicates some slices haven't finished
properly?
Cheers,
Saad.
On 4 Jan 2010, at 12:48, Christian Lambert wrote:
> Hi all,
>
> I've been running a bedpostx batch over christmas, and am now
> finding one subject slightly problematic. Essentially BedpostX has
> run producing data_slice_00->79 and nodif_mask_slice 00->79 in the
> host directory, and in the created bedpostx directory I have a
> additional directory "diff_slices" containing dataslice 00->79. The
> problem comes in that there are no merged files. I have attempted to
> re-run it (as all the slices are essentially pre-processed) but with
> no joy. The error message that appears in the post-processing stage
> is:
>
> Error: /home/fsl/fsl/bin/bedpostx Line 220 14432 Terminated $
> {subdir}.bedpostx/monitor
>
> To clarify I'm using FSL_vm5_64 with 2 CPUs dedicated and ~10GB RAM.
> The subjects prior and after have processed without a problem.
>
> Any suggestions much appreciated. Is there a command line to try
> this manually?
>
> Thanks,
>
> - Chris
>
> --
> Dr Christian Lambert,
> Wellcome Trust Clinical Research Fellow,
> Wellcome Department of Imaging Neuroscience,
> Institute of Neurology,
> 12 Queen Square,
> London, WC1N 3BG.
>
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
+44 (0) 1865 222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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