you don't need to su as sgeadmin, you could use qconf -am <your
userid> to be a sge admin and submit your job then.
2009/12/11 mic-dti-server <[log in to unmask]>:
> Dear
>
> Everything works fine now. I redo my bedpostx by using "su sgeadmin" to
> submit my job, which works well. And I modified the slots, too, whcih is OK
> now.
>
> Thank you very much! I will let you know if anything wrong comes up again.
>
> Bests!
>
>
> 2009-12-11
> ________________________________
> mic-dti-server
> ________________________________
> 发件人: Matt Glasser
> 发送时间: 2009-12-11 13:06:49
> 收件人: [log in to unmask]
> 抄送:
> 主题: Re: [FSL] Asking for your help about running bedpostx on SGE
>
> Well, it also matters what user you were using to start the jobs (which was
> probably not sgeadmin, as that is usually reserved as a special user). The
> slots parameter should look something like this (which is from my 2 node 8
> core minicluster):
>
>
>
> slots 1,[desktop1=8],[desktop2=8]
>
>
>
> Where desktop1 and desktop2 are my two computer's host names. If it still
> isn't working right, post the output of qstat -f
>
>
>
> Peace,
>
>
>
> Matt.
>
>
>
> ________________________________
>
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
> Of mic-dti-server
> Sent: Thursday, December 10, 2009 10:59 PM
> To: [log in to unmask]
> Subject: Re: [FSL] Asking for your help about running bedpostx on SGE
>
>
>
> The username of SGE on machine A and B are both sgeadmin. When I run
> bedpostx, I was logging in A as root. I do not know what is causing the
> Permission denied before. So I will use chmod -R 777 in the future if the
> similar problem come up.
>
>
>
> I have 8 CPUs on B, so I can just modify the all.q, long.q, verylong.q etc
> and change the parameter "slot" from 1 to 8, to make all the 8 CPUs work,
> right?
--
Best Regards
Xue, Feng Phd. candidate
Major in Developmental Cognitive Neuroscience
National Key Laboratory of Cognitive Neuroscience and Learning
Beijing Normal University
Beijing, China. 100875
Tel: +86-13810154455
web: http://psychbrain.bnu.edu.cn
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