Hi
I had a question regarding fslvbm_2_template step of FSL-VBM
I ran fslvbm_1_bet on images named like *mprr.nii.gz" and then put the images
I needed for the template into template_list. Template list was the list of
original files (*mprr.nii.gz")
I then ran fslvbm_2_template on those images and it bombed. In the "struc"
directory created in the first step, I got a series of files, but the ones I
needed were named like "*mprr.nii.gz_struc.nii.gz_brain.nii.gz".
However, in looking at fslvbm2a in the struc directory, I see that the program
was looking for files like "*mprr.nii.gz_struc.nii.gz_brain.nii.gz_brain.nii.gz".
Those didn't exist.
I got the program to work by removing the "_brain" from line 99 of the
fslvbm_2_template file, but did I do something wrong in the first place?
Best,
Matt
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