Thank you!
"David V. Smith" <[log in to unmask]> escribió:
> Just type cluster into the command line. You'll see the usage for it
> then. If you look in your report_log.html file, you'll also see how
> those files are generated within FEAT. Mine looks like this:
> /usr/local/fsl-4.1.4-centos4_64/bin/cluster -i thresh_zstat1 -c
> stats/ cope1 -t 2.3 -p 0.05 -d 0.106361 --volume=256101 --
> othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm
> -- olmax=lmax_zstat1_std.txt > cluster_zstat1_std.txt
>
> /usr/local/fsl-4.1.4-centos4_64/bin/cluster2html . cluster_zstat1 -std
>
>
>
> --
> David V. Smith
> Graduate Student, Huettel Lab
> Department of Psychology and Neuroscience
> Duke University
> Durham, NC 27708
> http://www.mind.duke.edu/huettellab/
>
>
>
>
>
>
> On Nov 2, 2009, at 6:07 AM, DARYA CHYZHYK . wrote:
>
>> Hi, David
>>
>> thank you for you reply.
>> About cluster command line tool: What tools do you mean? I found
>> fslmaths with different operation, but I want find something like
>> output files after FEAT, like this:
>> cluster_zstat1.html / .txt the list of significant clusters for contrast 1.
>> lmax_zstat1.txt and _std.txt are lists of local maxima within
>> clusters found when thresholding,
>> which can you see in the cluster browser.
>>
>> sincerely yours, Darya.
>>
>>
>> Quoting "David V. Smith" <[log in to unmask]>:
>>
>>> Hi Darya,
>>>
>>> If you have a thresholded statistical image, you can use the
>>> cluster command line tool to extract the coordinates of local
>>> maxima and the statistical values from it. You can use FSLview
>>> and one of the atlases to see the anatomical region in which a
>>> specific coordinate falls. More information about both of these
>>> tools is on the FSL website and in other forum posts.
>>>
>>> Cheers,
>>> David
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On Nov 1, 2009, at 5:57 PM, DARYA CHYZHYK . wrote:
>>>
>>>> Hello,
>>>>
>>>> My name is Darya Chyzhyk.
>>>>
>>>> I'm working on the VBM data and am doing VBM analyse by FSL-VBM.
>>>> Using randomise function I obtained some results, for example the
>>>> file ?fslvbm_tfce_corrp_tstat1?.
>>>> I have a question:
>>>> How can I get a file (or table?) with statistical information
>>>> (Statistic Parametrical Map), for example:
>>>>
>>>> - t-value,
>>>> - coordinate of significant vóxeles,
>>>> - cortical region, etc.
>>>>
>>>>
>>>>
>>>> Thank you in advance for your replay,
>>>>
>>>> sincerely yours, Darya Chyzhyk.
>>>
>>>
>
>
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