Hi Steve,
thanks for answer.
The pending job is "tbss_2_reg" and there are *msf files from each
subject to each other, however many of them are empty....
Seems that there was a SGE overload and that I have to rerun the whole...
Thanks again,
Markus
2009/11/26 Stephen Smith <[log in to unmask]>:
> Hi - look to see what the pending job is, then look in the "FA" subdirectory
> at the list of *.msf to see if any are empty, hopefully that should lead you
> in the right direction,
> Cheers, Steve.
> On 25 Nov 2009, at 08:43, Markus Gschwind wrote:
>
> Dear TBSS experts!
>
> 3 days ago I sent to my SGE queue a task of tbss_2_reg -n with 56
> subjects (2mm isotropic FA images).
>
> Now the active queue is empty but there is still a tbss_2_reg job pending.
>
> My question is how I would know that the tbss_2_reg correctly finished
> or how (if not) I could reactivate this last job pending job.
>
> Note that during the last days, there were plenty other jobs (MATLAB,
> Probtrackx) going on in the queue (8 CPU, 16G of RAM)
>
> Any help greatly appreciated!
> Thanks
> Markus
>
> --
>
>
> Dr. med. Markus Gschwind, M.D.
> Laboratory for Neurology and Imaging of Cognition - Dept of Neurosciences
> University Medical Center (CMU)
> 1, Michel-Servet
> CH-1211 GENEVA - Switzerland
>
> Tel 0041 (0) 22 379 5324
> Fax 0041 (0) 22 379 5402
> email: [log in to unmask]
> http://labnic.unige.ch
>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
>
>
>
--
Dr. med. Markus Gschwind, M.D.
Laboratory for Neurology and Imaging of Cognition - Dept of Neurosciences
University Medical Center (CMU)
1, Michel-Servet
CH-1211 GENEVA - Switzerland
Tel 0041 (0) 22 379 5324
Fax 0041 (0) 22 379 5402
email: [log in to unmask]
http://labnic.unige.ch
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