How is the alignment between the two images in FSLView, prior to using
FNIRT?
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of John Pluta
Sent: Tuesday, November 24, 2009 4:43 PM
To: [log in to unmask]
Subject: Re: [FSL] fnirt warning
I should add- the t1 image has been affinely registered to the template
prior to my attempting to use fnirt. Affine registration was done using
SPM5. There are some specific reasons relating to the project that I have to
do the affine step with SPM5 and not flirt.
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