Dear Sebastian,
You will need to do some matrix maths in matlab to work
out how to set up the correct matrices. I'm currently away
from the lab but hopefully someone can give you the details.
Otherwise I'll reply in more detail in a couple of days.
All the best,
Mark
On 18 Nov 2009, at 10:01, Sebastian Rodrigo wrote:
> Dear Mark,
>
> I couldnīt convince a student to join happy FEAT users (as I am). At
> this
> time, we use SPM5 to normalize EPI & T1 data. If I not set properly
> the
> origin to anterior commissure before any processing, the
> normalization goes
> really wrong. After nifti conversion (needed for SPM5), fslorient -
> getorient
> says NEUROLOGICAL and move to RADIOLOGICAL after fslcreathd step
> described
> in the previous mail. I read the nifti1.h, I agree itīś quite
> technical for me.
> What is the best way to properly edit the sform or qform matrix ?
>
> Best regards
>
> Sebastian
>
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