Have you changed your data directory after making this melodic script?
It seems that you doesn't have required data in your target directory.
On Fri, Nov 13, 2009 at 10:54 PM, Shal Hat <[log in to unmask]> wrote:
>
>
> On Wed, Nov 11, 2009 at 5:07 PM, *Shal Hat* <[log in to unmask]> wrote:
>
>> Am getting the following error on while running Melodic? Anyone? Thanks !
>>
>>
>> /bin/mkdir -p reg
>>
>> /Applications/fsl/bin/fslmaths
>> /Applications/fsl/data/standard/MNI152_T1_2mm_brain
>> standard
>>
>> /Applications/fsl/bin/flirt -ref standard -in example_func -out
>> example_func2standard -
>> omat example_func2standard.mat -cost corratio -dof 12 -searchrx -90 90
>> -searchry -90
>> 90 -searchrz -90 90 -interp trilinear
>> ** ERROR (nifti_image_read): failed to find header file for 'example_func'
>> ** ERROR: nifti_image_open(example_func): bad header info
>> Error: failed to open file example_func
>> ERROR: Could not open image example_func
>> Image Exception : #22 :: Failed to read volume example_func
>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>
>> /Applications/fsl/bin/convert_xfm -inverse -omat standard2example_func.mat
>> example_func2standard.mat
>> Could not open matrix file example_func2standard.mat
>> Cannot read input-matrix
>>
>> /Applications/fsl/bin/slicer example_func2standard standard -s 2 -x 0.35
>> sla.png -x 0.45
>> slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y
>> 0.55 slg.png -y
>> 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65
>> sll.png ;
>> /Applications/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png +
>> sle.png + slf.png
>> + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png
>> example_func2standard1.png
>> ; /Applications/fsl/bin/slicer standard example_func2standard -s 2 -x 0.35
>> sla.png -x 0.45
>> slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y
>> 0.55 slg.png -y
>> 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65
>> sll.png ;
>> /Applications/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png +
>> sle.png + slf.png
>> + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png
>> example_func2standard2.png
>> ; /Applications/fsl/bin/pngappend example_func2standard1.png -
>> example_func2standard2.png example_func2standard.png; /bin/rm -f sl?.png
>> ** ERROR (nifti_image_read): failed to find header file for
>> 'example_func2standard'
>> ** ERROR: nifti_image_open(example_func2standard): bad header info
>> Error: failed to open file example_func2standard
>> ERROR: Could not open image example_func2standard
>> Image Exception : #22 :: Failed to read volume example_func2standard
>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>> sh: line 1: 12320 Abort trap /Applications/fsl/bin/slicer
>> example_func2standard
>> standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65
>> sld.png -y 0.35
>> sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z
>> 0.45 slj.png -z
>> 0.55 slk.png -z 0.65 sll.png
>>
>> Cannot open sla.png for reading
>> ** ERROR (nifti_image_read): failed to find header file for
>> 'example_func2standard'
>> ** ERROR: nifti_image_open(example_func2standard): bad header info
>> Error: failed to open file example_func2standard
>> ERROR: Could not open image example_func2standard
>> Image Exception : #22 :: Failed to read volume example_func2standard
>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>> sh: line 1: 12322 Abort trap /Applications/fsl/bin/slicer
>> standard
>> example_func2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png
>> -x 0.65
>> sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z
>> 0.35 sli.png -z
>> 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png
>>
>> Cannot open sla.png for reading
>>
>> Cannot open example_func2standard1.png for reading
>
>
--
Best Regards
Xue, Feng Phd. candidate
Major in Developmental Cognitive Neuroscience
National Key Laboratory of Cognitive Neuroscience and Learning
Beijing Normal University
Beijing, China. 100875
Tel: +86-13810154455
web: http://psychbrain.bnu.edu.cn
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