Hi,
Is the brain mislabelled ( e.g. do the AP LR labels match how the
brain is displayed )? If not then you can use fslswapdim to reorganise
the storage order of the image.
Many Regards
Matthew
> Hi,
>
> I use BET to extract the brain. However when I looked at it using
> FSLVIEW, the brain was
> inverted (cortex on bottom, anterior is where Right should be and
> posterior is where Left
> should be). How would I be able to resolve this issue? What caused
> it? How will it affect my
> GLM or ICA analysis?
>
> Thanks a million :)
>
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