Hi Chun,
Thank you for your response. Yes, I was using the GUI. However, it seems
that one is not able to deselect 'standard space registration' for
multisession temporal concatenation (it seems that this option can only be
deselected for single-session ICA).
Any thoughts on why standard-space registration is hard-wired for this form
of melodic, and whether there may be some other way around it?
Best,
Lucina
On Mon, 9 Nov 2009 00:10:37 +0800, Chun Meng <[log in to unmask]> wrote:
>Hi, Lucina
>
>Did you run GUI-based processing? If so, typing in "Melodic", you can
>disable the button for standard space in registration to avoid repeated
>normalisation. Likewise, other optional processing could be shut down.
>
>Another better way is script-based processing in my experience. As you have
>normalised datasets, just type in "melodic", which gives tips.
>
>For example:
>melodic -i list_file_name.txt -o out_dir -m brain_mask --report --tr -a
>concat -d IC_number
>
>list_file_name.txt could be:
>$inpath/sub1.nii.gz
>$inpath/sub2.nii.gz
>...
>Best
>--
>Chun Meng, Master candidate
>NeuroImage Computing group,
>National key Laboratory of Cognitive Neuroscience and Learning,
>http://psychbrain.bnu.edu.cn/en/index.htm,
>Beijing Normal University,
>Beijing 100875, China
>--
>I am focusing on brain mechanism and probe into it by fMRI, sMRI, DTI.
>I am interested in the related PhD program started in fall, 2010.
>
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