Hi,
Im trying to register my FA map to T1 weighted image. I tried using 12, 9,
and 7 DOF, but for each registration the brainstem does not seem to align
very well between the T1 and the FA registered to the T1. Could you
recommend any alterations to the flirt command line in order to correct for
this? I attached a screen shot of the mis-alignment.
Thank you,
Anastasia
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