Hi,
You can view the images in any viewer, not just fslview.
I wouldn't use the xml file to work out the labels.
Instead use:
http://www.fmrib.ox.ac.uk/fsl/first/cma_subcortical_label.html
for the subcortical labels.
All the best,
Mark
On 27 Nov 2009, at 16:48, Thao Do wrote:
> Thanks, but haven't compiled fslview and want to avoid using it if
> possible.
>
> Is there anyway to decode the xml files? For example, in ${FSLDIR}/
> data/atlases/HarvardOxford-Subcortical, what do the x, y and z
> attribute represent?
>
> Many Thanks,
> Thao
>
>
> On Fri, Nov 27, 2009 at 2:44 AM, Matthew Webster <[log in to unmask]
> > wrote:
> You can just open them directly in fslview - e.g.
>
> fslview ${FSLDIR}/data/atlases/HarvardOxford/HarvardOxford-cort-
> prob-2mm.nii.gz
>
> will display the 2mm cortical atlas..
>
> Many Regards
>
> Matthew
>
> Hello,
>
> Can anyone tell me if there is a way to display the Harvard-Oxford
> Cortical
> and Subcortical Structural atlases without using the atlas toolbar
> in FSLView?
>
> Right now I'm trying to find a way to decode the xml files in
> $FSLDir/data/atlases and produce a color-coded volume of the brain
> using
> ImageJ. I'm not sure if this is possible yet.
>
> Thank you in advance!
>
> Thao
>
>
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