-------- Original Message --------
Subject: Re: fit RNA/DNA
Date: Sat, 14 Nov 2009 01:59:14 +0000
From: Paul Emsley <[log in to unmask]>
To: ray brown <[log in to unmask]>
References: <[log in to unmask]>
ray brown wrote:
> Is there any way to real space refine RNA/DNA base-pairs while constraining
> the W-Crick H-bond distances and stop them blowing up? I cannot find any
> FIT RNA/DNA that would work like the FIT PROTEIN command? Has anyone
> come up with a work around for automated RNA/DNA model real space
> refinement that does not destroy the double helical geometry? Please send me
> your ideas and suggestions.
>
There is no way of doing this sadly. It is on the list - you are not
the only one who want this.
The best you can do now is rigid-body refine chain-fragment pairs.
Paul.
|