Sloop can generate both a best conformation and ensembles.
http://www.ysbl.york.ac.uk/~cowtan/sloop/sloop.html
Coot has both its own loop building code, and an interface to loopy from
ARP/wARP. If people like sloop we'll add that to Coot too in due course.
Tommi Kajander wrote:
> Dear all
> I was wondering if anyone knows a simple way to generate a missing loop
> (strech of amino acids)
> really in just some simple manner (no fancy minization necessary, of
> course some constraints probably dont
> hurt), just for visualization purposes of further simulations etc....
>
> thanks!
> tommi
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