I can suggest 2 things:
look for the work by Janet Thornton et alteri, they have analysed loops
(and classified them) in protein structures so that they might have
loop modelling tools;
also Gert Vriend's program WHATIF might have something along those
lines... I think the program still exists (it is gigantic) and has been
ported to recent Unices.
Fred.
Tommi Kajander wrote:
> Dear all
> I was wondering if anyone knows a simple way to generate a missing
> loop (strech of amino acids)
> really in just some simple manner (no fancy minization necessary, of
> course some constraints probably dont
> hurt), just for visualization purposes of further simulations etc....
>
> thanks!
> tommi
>
>
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