Hi Guillaume,
We do use WFU_Pickatlas, so we'll update that and see if we still get
this problem.
Thanks,
Xin
On Wed, Oct 7, 2009 at 8:58 AM, Guillaume Flandin
<[log in to unmask]> wrote:
> Dear Xin,
>
> if you have a toolbox in your path that takes precedence of the SPM
> function spm_getSPM.m then the bug can still appear. Type:
>>> which spm_getSPM -all
> to check if that is the case. If so, remove that toolbox from your
> Matlab path or patch it like this:
> https://www.jiscmail.ac.uk/cgi-bin/wa.exe?A2=SPM;vDpQZw;20080618180823%2B0100
>
> Best regards,
> Guillaume.
>
> Xin Zheng wrote:
>> Hi Guillaume,
>>
>> I forgot to mention that we already have the latest updates (3381 I
>> believe). Are there specific files we can look at to help troubleshoot
>> this problem?
>>
>> Thanks,
>> Xin
>>
>> On Wed, Oct 7, 2009 at 5:56 AM, Guillaume Flandin
>> <[log in to unmask]> wrote:
>>> Dear Xin,
>>>
>>> what you describe seems to be symptomatic of a bug that was present in
>>> updates 1111 of SPM5 so I would suggest that you install the most recent
>>> updates from:
>>> ftp://ftp.fil.ion.ucl.ac.uk/spm/spm5_updates/
>>> so that newer files overwrite existing files.
>>> Note that if it is indeed the cause of the problem you describe, you
>>> will have to specify and estimate your models again as the SPM.mat has
>>> been somehow corrupted.
>>>
>>> Best regards,
>>> Guillaume.
>>>
>>>
>>> Xin Zheng wrote:
>>>> Dear SPM users.
>>>>
>>>> We have encountered a persistent problem with SPM5 contrast manager.
>>>> We first ran the model and set up the contrast for analysis 1. We then
>>>> opened another analysis (analysis 2) that was set up by another
>>>> computer in the network. When we opened the contrast manager for
>>>> analysis 1 again, only the contrasts pertaining to analysis 2 (not 1)
>>>> popped up in the GUI. However, when we checked the directory where
>>>> analysis 1 was stored, it seemed to contain all the constrasts we
>>>> originally set up.
>>>>
>>>> We also noticed that in the SPM.mat file in analysis 1, the 'swd'
>>>> variable pointed to the directory for analysis 2. Is this a path issue
>>>> in SPM?
>>>>
>>>> We have tried restarting SPM - but it's still not showing the data for
>>>> analysis 1. All the analyses were done in their own directories.
>>>>
>>>> Has anyone else encountered this problem? Any help would be much appreciated.
>>>>
>>>> Thanks,
>>>> Xin & Catherine
>>> --
>>> Guillaume Flandin, PhD
>>> Wellcome Trust Centre for Neuroimaging
>>> University College London
>>> 12 Queen Square
>>> London WC1N 3BG
>>>
>>>
>>
>>
>
>
> --
> Guillaume Flandin, PhD
> Wellcome Trust Centre for Neuroimaging
> University College London
> 12 Queen Square
> London WC1N 3BG
>
>
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