With your Freesurfer bin directory in your path, enter "mri_convert" at
the command line:
--apply_transform xfmfile (-T or -at)
The talairach.xfm file in your Freesurfer subject's directory is
probably to the MNI305 target.
If you want it specifically to Colin, you'll need to use some affine
registration tool to register your subject to Colin, and feed
mri_convert that matrix. If you use a skull-stripped source, use a
skull-stripped target.
On 10/21/2009 05:31 AM, Gabriel Go.Es. wrote:
>
> Hello
>
> i have a question
> i want to convert an MRI subject (brainmask.mgz in talairach apace)
> and a mask of subcortical structure of the same subject, from
> freesurfer to MNI colins space to work with SPM5, how can i make it?
>
> and in fact i need to make this transformation to a set of subjects.
> any help will be so appreciated
>
> Best Regards
> Gabriel
>
>
>
>
> ------------------------------------------------------------------------
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