Hi I have a dataset that has been affected by the infamous Siemens vibration
artifact.
I am desperately trying to make use of the dataset and doing TBSS analysis
by following the directions which results in no significance in my areas of
interest (or anywhere).
Since the artifact happens in an area that does not include my regions of
interest I have been going in the direction of trying to mask out the
artifact part of the brain during the randomise command with the -m option.
Unsuccessfully.
At this point I am wondering if the artifact is affecting my normalization
during the tbss_2_reg step or possibly the skeletonisation and creation of
the mean FA image during the tbss_3_postreg step?
Does anyone have a suggestion?
Any direction would be appreciated!
Thanks
Chrissy
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