Hi all,
I'm reasonably new to FSL, and trying to get parts of it up and running with the LONI
pipeline. One thing that's causing me a little grief is the need to set FSLOUTPUTTYPE to,
y'know, set FSL's output type.
It'd be fabulous if I could say:
bet anat.nii anat_stripped.nii.gz
and have the output actually be a gzipped nifti. Or say:
bet anat.nii anat_stripped.img
and get a nifti pair.
Might I rather humbly suggest that specifying a filename with extension remove the
requirement for setting that environment variable? And, possibly, override it when it is
set?
Thanks for making FSL available!
Cheers,
-Nate
UW - Madison
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