Greetings,
I have has some problems implementing FSL, I want to do probabilistic fiber
tracking using Siemens 3T dicom volumes.
From my dicom files (1+20 directions b=1000) was able to create
Analyze 7.5, NIFTII, FSL NIFTII, and Analyze SPM files using
MRIconvert. But when I started using the 64 bit CentOS FSL 4.1.2 for
DTI eddy current correction GUI, I obtained the error message below
and the error was similar no matter which of the files I used:
____________________________________________________
wrong # args: should be "ecc_update_files w filename"
wrong # args: should be "ecc_update_files w filename"
while executing
"ecc_update_files .fdt
/home/user/MRI_DATA/Maria_data_set/Data_Set_1/Adult Control
PC/FileConv_AdultCntrl_DTI/NAMCF_NIFTII/77def287-922b-4c_29_ep2d_dif..."
("eval" body line 1)
invoked from within
"eval "$command $outputfile1" "
(procedure "feat_file:invoke" line 29)
invoked from within
"feat_file:invoke .wdialog1 eddy(input) .fdt.ecc.input.var_filhis
.fdt.ecc.input.var_selhis ::FileEntry {ecc_update_files .fdt}"
invoked from within
".wdialog1.f4.but_ok invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 22)
invoked from within
"tk::ButtonUp .wdialog1.f4.but_ok"
(command bound to event)
__________________________________________
I would appreciate information about what am I suppose to do next.
Also, if I just go ahead and do the BEDPOSTX estimation, I obtain the error:
___________________________________________
window name "prompt" already exists in parent
window name "prompt" already exists in parent
while executing
"toplevel .prompt -borderwidth 5"
(procedure "MxPause" line 4)
invoked from within
"MxPause "Errors: $junk""
(procedure "fdt_monitor" line 29)
invoked from within
"fdt_monitor $w "${FSLDIR}/bin/bedpostx $bedpost(directory) -n
$bedpost(nfibres) -w $bedpost(weight) -b $bedpost(burnin)""
("bedpostx" arm line 28)
invoked from within
"switch -- $probtrack(tool) {
eddy_current {
global eddy
set errorStr ""
if { $eddy(input) == "" } { set errorStr "You need to specify..."
(procedure "fdt:apply" line 5)
invoked from within
"fdt:apply .fdt keep"
invoked from within
".fdt.apply invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 22)
invoked from within
"tk::ButtonUp .fdt.apply"
(command bound to event)
_____________________________________
I am really confused about about the best way of advancing, and I
would appreciate your assistance.
If I could some how call you, that would be extremely nice, but
email assistance would also be deeply appreciated.
Best regards,
Nicolás Lori.
--
Nicolás Francisco Lori
Visual Neuroscience Laboratory
IBILI-Faculdade de Medicina
Azinhaga de Santa Comba
3000-354 Coimbra Portugal
Phone 00 351 239480248
Fax 00 351 239480217
email: [log in to unmask]
|