It sounds like your input is corrupted. Can you try regenerating it?
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Laura Danielian
Sent: Wednesday, September 02, 2009 9:41 AM
To: [log in to unmask]
Subject: [FSL] problem with fslchfiletype conversion
Hi,
I am having some trouble converting 2 images from analyze to nii.gz format
for use in TBSS. The files are getting cropped (about the top 10 slices)
after conversion, and I get error messages about "Missing header/image
files" and "Failed to load base image. Command line processing aborted."
when trying to view in fslview and the following when using fslmaths:
++ WARNING: nifti_read_buffer(FA.nii.gz):
data bytes needed = 3483864
data bytes input = 2624584
number missing = 859280 (set to 0)
I ran fslhd and got the same output except for a difference in the
vox_offset which was 0 on the analyze file and 352 on the nifti_gz file.
However, this was also true for files that did not have trouble with the
conversion. We are using regular characters in the file names-no spaces.
Your help is appreciated!
Thanks,
Laura
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