Hi,
I'm very sorry, but I'm not solving the problem, I have read the log
file you said and it is not clarifying anything to me. Melodic seems
to stop just when it starts with the components.
Here I send you a log file only with 3 subjects (where melodic ends
ok) and another with 8 (where melodic does not end).
Thank you again for your help.
Ignacio
Melodic Version 3.09
/usr/local/fsl/bin/melodic -i .filelist -o groupmelodic.ica -v --nobet --bgthreshold=3 --tr=2.5 --report --guireport=../../report.html --bgimage=bg_image -d 0 --mmthresh=0.5 --Ostats -a concat
---------------------------------------------
Melodic results will be in groupmelodic.ica
Create mask ... done
Reading data file /Users/ignacio/Desktop/prueba_denoising/3pats/denoised_datarsn_pat01.ica/reg_standard/filtered_func_data ... done
Estimating data smoothness ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/prueba_denoising/3pats/denoised_datarsn_pat02.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/prueba_denoising/3pats/denoised_datarsn_pat03.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Excluding voxels with constant value ... done
Normalising jointly by voxel-wise variance ... done
Initial data size : 300 x 47233
Reading data file /Users/ignacio/Desktop/prueba_denoising/3pats/denoised_datarsn_pat01.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/prueba_denoising/3pats/denoised_datarsn_pat02.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/prueba_denoising/3pats/denoised_datarsn_pat03.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Data size : 192 x 47233
Starting PCA ... done
Start whitening using 64 dimensions ...
retaining 71.8338 percent of the variability
... done
Starting ICA estimation using concat
Step no. 1 change : 0.991188
Step no. 2 change : 0.972195
Step no. 3 change : 0.994758
Step no. 4 change : 0.942099
Step no. 5 change : 0.549434
Step no. 6 change : 0.310928
Step no. 7 change : 0.169854
Step no. 8 change : 0.0746012
Step no. 9 change : 0.0441409
Step no. 10 change : 0.0401455
Step no. 11 change : 0.0228119
Step no. 12 change : 0.0111179
Step no. 13 change : 0.00534199
Step no. 14 change : 0.00794068
Step no. 15 change : 0.00661271
Step no. 16 change : 0.00598052
Step no. 17 change : 0.00373737
Step no. 18 change : 0.00305856
Step no. 19 change : 0.00254177
Step no. 20 change : 0.00199046
Step no. 21 change : 0.0015399
Step no. 22 change : 0.00114058
Step no. 23 change : 0.000847086
Step no. 24 change : 0.000668691
Step no. 25 change : 0.000539619
Step no. 26 change : 0.000435949
Convergence after 26 steps
Sorting IC maps
Calculating T- and S-modes
Writing results to :
groupmelodic.ica/melodic_IC
groupmelodic.ica/melodic_Tmodes
groupmelodic.ica/melodic_Smodes
groupmelodic.ica/melodic_mix
groupmelodic.ica/melodic_FTmix
groupmelodic.ica/melodic_PPCA
groupmelodic.ica/melodic_ICstats
groupmelodic.ica/mask
...done
Creating report index page ...done
Running Mixture Modelling on Z-transformed IC maps ...
IC map 1 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_1
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat1
creating report page ... done
IC map 2 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_2
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat2
creating report page ... done
IC map 3 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_3
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat3
creating report page ... done
IC map 4 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_4
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat4
creating report page ... done
IC map 5 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_5
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat5
creating report page ... done
IC map 6 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_6
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat6
creating report page ... done
IC map 7 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_7
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat7
creating report page ... done
IC map 8 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_8
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat8
creating report page ... done
IC map 9 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_9
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat9
creating report page ... done
IC map 10 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_10
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat10
creating report page ... done
IC map 11 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_11
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat11
creating report page ... done
IC map 12 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_12
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat12
creating report page ... done
IC map 13 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_13
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat13
creating report page ... done
IC map 14 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_14
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat14
creating report page ... done
IC map 15 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_15
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat15
creating report page ... done
IC map 16 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_16
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat16
creating report page ... done
IC map 17 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_17
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat17
creating report page ... done
IC map 18 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_18
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat18
creating report page ... done
IC map 19 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_19
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat19
creating report page ... done
IC map 20 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_20
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat20
creating report page ... done
IC map 21 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_21
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat21
creating report page ... done
IC map 22 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_22
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat22
creating report page ... done
IC map 23 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_23
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat23
creating report page ... done
IC map 24 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_24
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat24
creating report page ... done
IC map 25 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_25
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat25
creating report page ... done
IC map 26 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_26
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat26
creating report page ... done
IC map 27 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_27
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat27
creating report page ... done
IC map 28 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_28
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat28
creating report page ... done
IC map 29 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_29
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat29
creating report page ... done
IC map 30 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_30
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat30
creating report page ... done
IC map 31 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_31
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat31
creating report page ... done
IC map 32 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_32
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat32
creating report page ... done
IC map 33 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_33
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat33
creating report page ... done
IC map 34 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_34
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat34
creating report page ... done
IC map 35 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_35
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat35
creating report page ... done
IC map 36 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_36
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat36
creating report page ... done
IC map 37 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_37
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat37
creating report page ... done
IC map 38 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_38
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat38
creating report page ... done
IC map 39 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_39
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat39
creating report page ... done
IC map 40 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_40
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat40
creating report page ... done
IC map 41 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_41
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat41
creating report page ... done
IC map 42 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_42
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat42
creating report page ... done
IC map 43 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_43
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat43
creating report page ... done
IC map 44 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_44
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat44
creating report page ... done
IC map 45 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_45
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat45
creating report page ... done
IC map 46 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_46
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat46
creating report page ... done
IC map 47 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_47
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat47
creating report page ... done
IC map 48 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_48
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat48
creating report page ... done
IC map 49 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_49
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat49
creating report page ... done
IC map 50 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_50
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat50
creating report page ... done
IC map 51 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_51
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat51
creating report page ... done
IC map 52 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_52
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat52
creating report page ... done
IC map 53 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_53
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat53
creating report page ... done
IC map 54 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_54
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat54
creating report page ... done
IC map 55 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_55
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat55
creating report page ... done
IC map 56 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_56
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat56
creating report page ... done
IC map 57 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_57
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat57
creating report page ... done
IC map 58 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_58
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat58
creating report page ... done
IC map 59 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_59
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat59
creating report page ... done
IC map 60 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_60
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat60
creating report page ... done
IC map 61 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_61
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat61
creating report page ... done
IC map 62 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_62
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat62
creating report page ... done
IC map 63 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_63
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat63
creating report page ... done
IC map 64 ...
calculating mixture-model fit
saving probability map: groupmelodic.ica/stats/probmap_64
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: groupmelodic.ica/stats/thresh_zstat64
creating report page ... done
Writing results to :
groupmelodic.ica/melodic_IC
groupmelodic.ica/melodic_Tmodes
groupmelodic.ica/melodic_Smodes
groupmelodic.ica/melodic_mix
groupmelodic.ica/melodic_FTmix
groupmelodic.ica/melodic_PPCA
groupmelodic.ica/melodic_ICstats
groupmelodic.ica/mask
...done
To view the output report point your web browser at groupmelodic.ica/report/00index.html
finished!
Melodic Version 3.09
/usr/local/fsl/bin/melodic -i .filelist -o groupmelodic.ica -v --nobet --bgthreshold=3 --tr=2.5 --report --guireport=../../report.html --bgimage=bg_image -d 0 --mmthresh=0.5 --Ostats -a concat
---------------------------------------------
Melodic results will be in groupmelodic.ica
Create mask ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat01.ica/reg_standard/filtered_func_data ... done
Estimating data smoothness ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat02.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat03.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat04.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat05.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat06.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat07.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat10.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Excluding voxels with constant value ... done
Normalising jointly by voxel-wise variance ... done
Initial data size : 300 x 373819
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat01.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat02.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat03.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat04.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat05.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat06.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat07.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /Users/ignacio/Desktop/denoising_16_pats/denoised_datarsn_pat10.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Data size : 1432 x 373819
-------------------------------------------------------------------------------------------
Ignacio Cifre León
Dep. of Psychology
University of Balearic Islands
IUNICS
Crr. Valldemossa 7.5km
mailto: [log in to unmask] // [log in to unmask]
-------------------------------------------------------------------------------------------
El 11/09/2009, a las 18:32, Steve Smith escribió:
> Hi,
>
> On 11 Sep 2009, at 12:26, Ignacio Cifre wrote:
>
>> Hi,
>>
>> there's no log errors, after doing a single ica for each subject,
>> it does right the .gica>inputs and .gica>registration summary, but
>> stops when it is supposed to report the components (only creates
>> the html and the "main" link).
>> Denoised volumes look like normal, histogram and timeseries (from
>> fslview) show that denoising is working properly.
>> Single ICA has just finished running and all subjects show their
>> components and reports right, but the same fsf changing to multi-
>> session concatenation gives this error,
>
> What error?
> There are error log files inside the .gica directory - have a look
> for them.
> Cheers.
>
>
>> maybe it's a memory problem (i'm running it on a 4gb machine).
>>
>> Thank you very much for your help again.
>>
>> Ignacio
>>
>>
>> -------------------------------------------------------------------------------------------
>> Ignacio Cifre León
>> Dep. of Behavioural Methods.
>> University of Barcelona
>> Ps. Vall d'Hebron 171
>> mailto: [log in to unmask] // [log in to unmask]
>> -------------------------------------------------------------------------------------------
>>
>> El 11/09/2009, a las 08:41, Steve Smith escribió:
>>
>>> Hi,
>>>
>>> Is there anything useful in the logfile from the running melodic
>>> that never finishes? How far does it get? If you look at the
>>> denoised data in FSLView does it look sensible- i.e. look like
>>> 'normal' FMRI data?
>>>
>>> Cheers.
>>>
>>>
>>>
>>> On 9 Sep 2009, at 13:14, Ignacio Cifre wrote:
>>>
>>>> Hello,
>>>>
>>>> I'm running a group melodic using as data a previously denoised
>>>> functional volumes, melodic runs single ica for each subject
>>>> right but when it starts to do group analysis it seems to stop
>>>> and doesn't compute any component (but activity monitor shows
>>>> melodic is running and using 3gb of memory and 35gb of virtual
>>>> memory, and no changes after 3 days waiting). When I run the same
>>>> design with all the subjects without denoising it works fine and
>>>> shows all the components, do you have any idea of what's happening?
>>>>
>>>> There's one of my denoising commands, the only difference between
>>>> the two ica is this step, so I think the problem should be here.
>>>> fsl_regfilt -i rsn_pat01.ica/filtered_func_data -o
>>>> denoised_datarsn_pat01 -d rsn_pat01.ica/filtered_func_data.ica/
>>>> melodic_mix -f
>>>> "1,2,3,5,7,9,15,17,20,22,24,25,31,33,34,37,39,40,41,44,51,18,29,47,48,49,54,56,27,35,53,58,59
>>>> "
>>>>
>>>> Thank you very much for your help
>>>>
>>>> Ignacio
>>>>
>>>>
>>>>
>>>> /-------------------------------------------------------------------------------------------/
>>>> /-------------------------------------------------------------------------------------------/
>>>> Ignacio Cifre León
>>>>
>>>> Dep. of Psychology
>>>> University of Balearic Islands
>>>> Crr. Valldemossa km.7.5
>>>> Mallorca
>>>> mailto: [log in to unmask] // [log in to unmask]
>>>> /-------------------------------------------------------------------------------------------/
>>>> /-------------------------------------------------------------------------------------------/
>>>>
>>>
>>>
>>> ---------------------------------------------------------------------------
>>> Stephen M. Smith, Professor of Biomedical Engineering
>>> Associate Director, Oxford University FMRIB Centre
>>>
>>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>>> +44 (0) 1865 222726 (fax 222717)
>>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>>> ---------------------------------------------------------------------------
>>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
|
