>Save 3 files and use "pngappend"?
yes, that would be it.
cheers-
andreas
________________________________________
Von: FSL - FMRIB's Software Library [[log in to unmask]] im Auftrag von Jim Li [[log in to unmask]]
Gesendet: Mittwoch, 23. September 2009 06:47
An: [log in to unmask]
Betreff: Re: [FSL] How to use "slices" to see more slice after image registration
Thanks a lot, Stephen, :)
I was able to run "slicer " to get various outputs, including images w/ single
slice of any orientation that I want to output. However, if I want to get an
image w/, say, axial slices 30, 56 and 172 all in the same image file, how can I
do that? I tried "slicer b a -x 30 -x 56 -x 172 output" but it only saved one
image. How can I display all 3 in one image? Save 3 files and use "pngappend"?
Thanks,
Jim
On Tue, 22 Sep 2009 07:36:40 +0100, Stephen Smith
<[log in to unmask]> wrote:
>Hi - slices is a simple wrapper around 'slicer' - so see the slicer
>full command-line usage to get more control over what slices you get
>out.
>Cheers.
>
>
>On 21 Sep 2009, at 23:12, Jim Li wrote:
>
>> Hello, everybody:
>>
>> Can anyone answer a newbie question: after registering image volume
>> b to
>> image volume a using FNIRT or FLIRT, I tried "slices b a" to see how
>> well the
>> registration is done. But I can only see 9 images of 3 orientations.
>> How can I
>> see more or select my own slices to display w/ the "slices" command?
>>
>>
>>
>> Thanks a lot,
>>
>> Jim
>>
>> P.S. In FSLview I can blend the two volumes together to evaluation
>> goodness
>> of registration. But I really like to display one volume as
>> anatomical contours,
>> like what "slices b a" did. If "slices" have limited capability to
>> do what I want,
>> any other tool can do that?
>>
>
>
>--------------------------------------------------------------------------
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>Stephen M. Smith, Professor of Biomedical Engineering
>Associate Director, Oxford University FMRIB Centre
>
>FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>+44 (0) 1865 222726 (fax 222717)
>[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>--------------------------------------------------------------------------
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>
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>
>
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