Hi Venkateswaran,
I am confused. You said the fslvbm2a.e* was empty? From the look of your struc directory, it is however obvious that the GM segmentation images using fast were not created. Now you also say that you have some GM maps as you found a value of 1 in the ventricles, but I don't see any of them in your struc directory...
Where are your *_struc_GM.nii.gz?
Can you copy/paste the contents of the fslvbm2a.e and fslvbm2a.o?
Cheers,
Gwenaelle
--- En date de : Mar 15.9.09, Rajagopalan, Venkateswaran <[log in to unmask]> a écrit :
> De: Rajagopalan, Venkateswaran <[log in to unmask]>
> Objet: Re: [FSL] Re : [FSL] FSL-VBM GM template creation problem
> À: [log in to unmask]
> Date: Mardi 15 Septembre 2009, 19h02
> Hi,
>
> Thanks again
>
> template list
>
> control_003.nii.gz
> control_004.nii.gz
> control_005.nii.gz
> control_006.nii.gz
> control_008.nii.gz
> control_009.nii.gz
> control_010.nii.gz
> control_011.nii.gz
> control_012.nii.gz
> demen_001.nii.gz
> demen_003.nii.gz
> demen_006.nii.gz
> demen_007.nii.gz
> demen_009.nii.gz
> demen_017.nii.gz
> demen_020.nii.gz
> demen_022.nii.gz
> demen_027.nii.gz
>
>
> ls of struc directory
>
> control_003_struc_brain.nii.gz
> demen_008_struc.nii.gz
> control_003_struc.nii.gz
> demen_009_struc_brain.nii.gz
> control_004_struc_brain.nii.gz
> demen_009_struc.nii.gz
> control_004_struc.nii.gz
> demen_010_struc_brain.nii.gz
> control_005_struc_brain.nii.gz
> demen_010_struc.nii..gz
> control_005_struc.nii.gz
> demen_013_struc_brain.nii.gz
> control_006_struc_brain.nii.gz
> demen_013_struc.nii.gz
> control_006_struc.nii.gz
> demen_014_struc_brain.nii.gz
> control_008_struc_brain.nii.gz
> demen_014_struc.nii.gz
> control_008_struc.nii.gz
> demen_015_struc_brain.nii.gz
> control_009_struc_brain.nii.gz
> demen_015_struc.nii.gz
> control_009_struc.nii.gz
> demen_016_struc_brain.nii.gz
> control_010_struc_brain.nii.gz
> demen_016_struc.nii.gz
> control_010_struc.nii.gz
> demen_017_struc_brain.nii.gz
> control_011_struc_brain.nii.gz
> demen_017_struc.nii.gz
> control_011_struc.nii.gz
> demen_020_struc_brain.nii.gz
> control_012_struc_brain.nii.gz
> demen_020_struc.nii.gz
> control_012_struc.nii.gz
> demen_022_struc_brain.nii.gz
> demen_001_struc_brain.nii.gz
> demen_022_struc.nii.gz
> demen_001_struc.nii.gz
> demen_024_struc_brain.nii.gz
> demen_003_struc_brain.nii.gz
> demen_024_struc.nii.gz
> demen_003_struc.nii.gz
> demen_025_struc_brain.nii..gz
> demen_005_struc_brain.nii.gz
> demen_025_struc.nii.gz
> demen_005_struc.nii.gz
> demen_026_struc_brain.nii.gz
> demen_006_struc_brain.nii.gz
> demen_026_struc.nii.gz
> demen_006_struc.nii.gz
> demen_027_struc_brain.nii.gz
> demen_007_struc_brain.nii.gz
> demen_027_struc.nii.gz
> demen_007_struc.nii.gz
> demen_028_struc_brain.nii.gz
> demen_008_struc_brain.nii.gz
> demen_028_struc.nii.gz
>
>
> I reduced the size of the image to 83 kb. If you have
> problems please inform me. Thanks a lot.
>
> venkateswaran
>
>
>
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library on behalf of
> Gwenaëlle DOUAUD
> Sent: Tue 9/15/2009 1:32 PM
> To: [log in to unmask]
> Subject: Re: [FSL] Re : [FSL] FSL-VBM GM template creation
> problem
>
> Hi,
>
> > So do i need to change the
> > name in my template list to
> "control_003_struc.nii..gz"
> > instead of "control_003.nii.gz" what i have right
> now.
>
> No this should be fine... Could you please copy the result
> of an ls in your struc directory and the content of your
> template_list file?
>
> > I am attaching a a JPEG image of the print screen
> version
> > of GM and WM pve PLACED SIDE BY SIDE.
>
> There is no attachment. It might be that your jpeg is too
> big, try a lower resolution...
>
> Cheers,
> Gwenaelle
>
>
>
>
>
>
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