Hi Venkateswaran,
> After
> the first step of template_list creation i ran
> "fslvbm_1_bet -b" and cleaned manually some of the
> left over non brain regions in my data and placed the final
> cleaned files in "struc" directory which is under
> "my_fsl_vbm" directory.
how have you called this manually edited images? They have to have *exactly* the same name than the ones created by fslvbm1 (*_struc_brain.nii.gz)...
> Then i ran the
> second processing step of "fslvbm_2_template -n"
> under "my_fsl_vbm" directory. The processing step
> was complete after few hours when i looked at the
> "struc" directory there was no
> "template_4D_GM" file. When i opened one of the
> text files i.e fslvbm2e.e6190 to see what is in it the
> following error message was displayed
Hmmm, something has gone wrong much earlier in the script... If you have correctly named your manually edited brain images, then could you please give me the content of one of your fslvbm2a.e*, fslvbm2b.e*, fslvbm2c.e* and fslvbm2d.e* files?
> Furthermore I would also like to run VBM on white
> matter images, how to do this.
Please have a look at the archives for this: https://www.jiscmail.ac.uk/cgi-bin/webadmin?S1=fsl
Cheers,
Gwenaelle
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