Hi,
Thank you for your quick reply.
Yes, you are right. I checked the size of the
.nii file and it has indeed a different number of volumes.
After correction, it goes.
Thank you!
Michiru
Marko Wilke wrote:
> Hi,
>
> well, this seems to be an issue with Matlab anad exceeding your variable
> size. How many frames are there in your file? I believe it may be
> relevant to not enter more than that, i.e., if you have 100, don't enter
> '1:200'. There is also an option in Matlab to change the maximum
> variable size, if I remember correctly.
>
> Best,
> Marko
>
> Michiru Makuuchi schrieb:
>> Hi Marko and Jorge,
>>
>> I have the same problem.
>> Even after changing to '1:100' in
>> the file selection, I still got an error message as follows.
>> What can I do?
>> Thank you in advance,
>>
>> Michiru
>>
>> -----------------------------------------------------------------------
>> Running job #1
>> -----------------------------------------------------------------------
>> Running 'Realign & Unwarp'
>> Failed 'Realign & Unwarp'
>> Error using ==> colon
>> Maximum variable size allowed by the program is exceeded.
>> In file "/scr/einsteinium1/spm8.3164_7.7/spm_realign.m" (v1265),
>> function "smooth_vol" at line 388.
>> In file "/scr/einsteinium1/spm8.3164_7.7/spm_realign.m" (v1265),
>> function "realign_series" at line 262.
>> In file "/scr/einsteinium1/spm8.3164_7.7/spm_realign.m" (v1265),
>> function "spm_realign" at line 115.
>> In file
>> "/scr/einsteinium1/spm8.3164_7.7/config/spm_run_realignunwarp.m"
>> (v2337), function "spm_run_realignunwarp" at line 80.
>>
>> The following modules did not run:
>> Failed: Realign & Unwarp
>>
>>
>>
>>
>>
>> ----- "Marko Wilke" <[log in to unmask]> wrote:
>>
>>> Hi Jorge,
>>>
>>> this is an "issue" with the file selector: in the field under the
>>> filter (usually '.*'), there is an innocent-looking '1'. If you have 100
>>> frames in your nifti-file, change that to '1:100': now it allows you to
>>> select each frame.
>>>
>>> Enjoy,
>>> Marko
>>>
>>> discussion list Jorge Almeida schrieb:
>>>> Dear SPMers,
>>>>
>>>> I want to use 4D nii in my processing but I am getting some
>>> problems.
>>>> 1.Slice timing: after selecting my 1 4D nii file; it does not allows
>>> me to
>>>> press "done"; therefore I can not run slice timing.
>>>>
>>>> 2. Realing & Unwarp: I am able to select my 1 4D nii file; but when
>>> star running
>>>> I get the warnings attached; and when the it is done, the estimation
>>> EPI and
>>>> movement parameters is not familiar from what I am used with 3D
>>> img+hdr files
>>>> (see attached) and does not look correct.
>>>>
>>>> Any advice?
>>>> Many thanks in advance,
>>>> Jorge
>>>>
>>>>
>>>>
>>> ------------------------------------------------------------------------
>>> --
>>> =====================================================================
>>> Marko Wilke (Dr.med./M.D.)
>>> [log in to unmask]
>>>
>>> Universitäts-Kinderklinik University Children's Hospital
>>> Abt. III (Neuropädiatrie) Dept. III (Pediatric neurology)
>>> Hoppe-Seyler-Str. 1, D - 72076 Tübingen
>>> Tel.: (+49) 07071 29-83416 Fax: (+49) 07071 29-5473
>>> =====================================================================
>>
>
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