Dear all,
I try to use FAST using priors to aid segmentation. I am getting some
worrying messages while the process runs though - is it likely to be a
problem? (e.g. see last three lines)
Thanks so much for your help!
(I use an intel mac with os x 10.5 and the latest fsl package).
the command I use:
fast -g -a ./flirt_pre/10_brain8_brain_std_pre.nii.gz -b -B -o
./fast_prior/fastpr -v -p 10_brain8_brain &
and these are the comments I get:
/Applications/fsl/bin/flirt -ref 10_brain8_brain -in
/Applications/fsl/data/standard/tissuepriors/avg152T1_csf -out
./fast_prior/fastpr_csf_stdspace -applyxfm -init
./flirt_pre/10_brain8_brain_std_pre.nii.gz
terminate called after throwing an instance of 'NEWMAT::NotSquareException'
/Applications/fsl/bin/flirt -ref 10_brain8_brain -in
/Applications/fsl/data/standard/tissuepriors/avg152T1_gray -out
./fast_prior/fastpr_gm_stdspace -applyxfm -init
./flirt_pre/10_brain8_brain_std_pre.nii.gz
terminate called after throwing an instance of 'NEWMAT::NotSquareException'
/Applications/fsl/bin/flirt -ref 10_brain8_brain -in
/Applications/fsl/data/standard/tissuepriors/avg152T1_white -out
./fast_prior/fastpr_wm_stdspace -applyxfm -init
./flirt_pre/10_brain8_brain_std_pre.nii.gz
terminate called after throwing an instance of 'NEWMAT::NotSquareException'
csf prior image not transformed correctly! priors are not used!
Beginning prior-based initialisation
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