Hi,
Thanks - that is much more helpful.
It is nothing to do with your nifti images.
It is simply a bug that we noticed on some platforms
with respect to printf not behaving consistently. We
have fixed this and a patch exists at:
http://www.fmrib.ox.ac.uk/fsldownloads/patches/
simple download first_boundary_corr, and put it in
$FSLDIR/bin/
Once you've done this just re-run the commands
and hopefully they should work.
All the best,
Mark
On 24 Aug 2009, at 16:09, diagnostico imagenes wrote:
> Hi Mark,thanks!
>
>
> specific information:
>
>
> [servicio@Servicio carpeta]$ ls
> con01.nii.gz output-L_Pall_first.vtk
> con01_to_std_sub.mat output-L_Puta_first.bvars
> con01_to_std_sub.nii.gz output-L_Puta_first.vtk
> output_all_fast_origsegs.nii.gz output-L_Thal_first.bvars
> output-BrStem_first.bvars output-L_Thal_first.vtk
> output-BrStem_first.vtk output-R_Accu_first.bvars
> output.com output-R_Accu_first.vtk
> output.com2 output-R_Amyg_first.bvars
> output.com3 output-R_Amyg_first.vtk
> output-L_Accu_first.bvars output-R_Caud_first.bvars
> output-L_Accu_first.vtk output-R_Caud_first.vtk
> output-L_Amyg_first.bvars output-R_Hipp_first.bvars
> output-L_Amyg_first.vtk output-R_Hipp_first.vtk
> output-L_Caud_first.bvars output-R_Late_first.bvars
> output-L_Caud_first.vtk output-R_Late_first.vtk
> output-L_Hipp_first.bvars output-R_Pall_first.bvars
> output-L_Hipp_first.vtk output-R_Pall_first.vtk
> output-L_Late_first.bvars output-R_Puta_first.bvars
> output-L_Late_first.vtk output-R_Puta_first.vtk
> output.logs output-R_Thal_first.bvars
> output-L_Pall_first.bvars output-R_Thal_first.vtk
> [servicio@Servicio carpeta]$ cd output.logs/
> [servicio@Servicio output.logs]$ ls
> clean_up.e27001.1 first.e11182.17 first_flirt.o8966
> first.o11182.2
> clean_up.o27001.1 first.e11182.2 first.o11182.1
> first.o11182.3
> first.e11182.1 first.e11182.3 first.o11182.10
> first.o11182.4
> first.e11182.10 first.e11182.4 first.o11182.11
> first.o11182.5
> first.e11182.11 first.e11182.5 first.o11182.12
> first.o11182.6
> first.e11182.12 first.e11182.6 first.o11182.13
> first.o11182.7
> first.e11182.13 first.e11182.7 first.o11182.14
> first.o11182.8
> first.e11182.14 first.e11182.8 first.o11182.15
> first.o11182.9
> first.e11182.15 first.e11182.9 first.o11182.16
> first_post.e25471.1
> first.e11182.16 first_flirt.e8966 first.o11182.17
> first_post.o25471.1
> [servicio@Servicio output.logs]$ cat *.e*
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 134.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 105.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 79.9853515600: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 12101
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 129.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 101.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 72.9866332985: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 20099
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 136.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 98.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 73.9864501930: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 21535
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 129.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 95.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 71.9868164040: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 22565
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 132.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 89.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 72.9866332985: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 23778
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 118.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 97.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 75.9860839820: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 25142
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 130.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 102.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 80.9851684545: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 12743
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 136.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 97.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 79.9853515600: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 14164
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 129.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 94.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 81.9849853490: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 15161
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 132.0000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 88.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 78.9855346655: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 16427
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 134.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 106.5000000000: invalid number
> /usr/local/fsl/bin/first_boundary_corr: line 149: printf:
> 75.9860839820: invalid number
> terminate called after throwing an instance of
> 'NEWMAT::SingularException'
> /usr/local/fsl/bin/first_boundary_corr: line 88: 18850
> Abortado flirt -in ${imout}_roi -ref ${imlb} -out $
> {imout} -interp nearestneighbour -applyxfm -init $
> {imout}_trans_roi.mat
> ** ERROR (nifti_image_read): failed to find header file for 'output-
> L_Accu_corr'
> ** ERROR: nifti_image_open(output-L_Accu_corr): bad header info
> Error: failed to open file output-L_Accu_corr
> Cannot open volume output-L_Accu_corr for reading!
> ** ERROR (nifti_image_read): failed to find header file for
> 'output_all_fast_firstseg'
> ** ERROR: nifti_image_open(output_all_fast_firstseg): bad header info
> Error: failed to open file output_all_fast_firstseg
> ERROR: Could not open image output_all_fast_firstseg
> Image Exception : #22 :: Failed to read volume
> output_all_fast_firstseg
> Aborted
>
>
>
> Thanks!, Nicolas.
>
>
>
>
> Guardá correos, fotos, archivos, documentos, todo. ¡Ahora Hotmail te
> da espacio ILIMITADO! <output.logs.rar>
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