Yes - you could - though I have never seen this problem before - for
me, unsetting SGE_ROOT always works - maybe you have a locally
modified fsl_sub that doesn't obey this?
Cheers.
On 13 Aug 2009, at 03:58, Xue, Feng wrote:
> try modify $FSLDIR/bin/fsl_sub and in method config section, set
> METHOD=NONE below the outer "fi" line
>
> On Thu, Aug 13, 2009 at 3:19 AM, wolf zinke<[log in to unmask]
> bremen.de> wrote:
>> Hi,
>>
>> I try desperately to run FEAT without using SGE, but I have not
>> found a good
>> solution.I tried to use "unset SGE_ROOT" or "SGE_ROOT='';export
>> SGE_ROOT"
>> before calling "feat some.fsf" from the same shell. But for some
>> reason it
>> always submits all jobs to SGE. I want to run a set of feat
>> analysis single
>> threaded because otherwise I am running out of RAM pretty fast. It
>> would be
>> great to have a simple flag withing Feat that sets whether to use
>> or not to
>> use SGE facilities via fsl_sub. Is there such an reliable option
>> already
>> available?
>>
>> Thanks for all the help,
>> wolf
>>
>
>
>
> --
> Best Regards
>
>
> National Key Laboratory of Cognitive Neuroscience and Learning
> Beijing Normal University
> Beijing, China. 100875
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