Hi Aga,
this should be fine if you put your original T1w analyze images names in the template_list file. It should handle the extensions properly...
Cheers,
Gwenaelle
--- En date de : Mer 12.8.09, Agnieszka Burzynska <[log in to unmask]> a écrit :
> De: Agnieszka Burzynska <[log in to unmask]>
> Objet: [FSL] Template_list in fslvbm
> À: [log in to unmask]
> Date: Mercredi 12 Août 2009, 16h57
> Dear all,
> I am using fslvbm for the first time, hence this basic
> question.
>
> The T1-WI in my vbm directory were in ANALYZE format. After
> running
> fslvbm_1_bet, in struc directory, _struc. Files are still
> in ANALYZE, but
> _struc_brain. And _struc_cut are in NIFTI.
>
> How should my template_list look like? Is the fileformat a
> problem? Should
> it match filenames in vbm directory or struc subdirectory?
> Or can I leave
> the file extension out and list the Ids only?
>
> Thank you,
> Aga
>
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