Hi,
What option did you use for tbss_2_reg ? You can put in a custom
target at that stage.
If you need to change standard space images in later scripts it's very
easy to find and change those target image names in the scripts.
Cheers, Steve.
On 10 Aug 2009, at 23:41, Xintian Yu wrote:
> Hi,
>
> At tbss_3_postreg step, all images (including the target) are affine-
> aligned
> to MNI152. My question is if there is an option to use custom space
> (e.g. a
> special atlas or simply an individual image) instead of MNI152 here.
> The
> reason for doing this is that we are working with pre-term neonatal
> MRI and
> a standard adult template such as MNI152 might not be appropriate.
> We also
> work with rat MRI so apparently using MNI152 will result in funny
> results
> (we actually have tried!).
>
> BTW, I'm new to FSL and TBSS. I've searched the forum achieve but
> couldn't
> find anything related.
>
> Thanks in advance,
> Xintian
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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